Note: since it is not said in the movie I am going to say here Loki's imprisonment in SHIELD custody was for a few days.

Last chapter: the Red Skull and his minions celebrated their victory, Princess Celestia. The Wonderbolts and Twilight's friends and family discusses what to do about what had happened at the wedding and Twilight and Soarin are introduced to a man called Stark and has led them to meet other people involved in a mission to save the world from a villain called Loki who SHIELD has imprisoned in the Hellicarrier

"Okay let's get to the introductions" said Stark and then walked up to the purple shirted man in glasses.

"This here is Dr Bruce Banner, a science nerd who can turn into a green other guy when he's angry" Stark said pointing to Bruce Banner who shook his head. Stark then pointed to the man in the blue, red and white armour.

"This here is Steve Rogers or Captain America, 70 years ago he was a volunteer in an experiment, became a super soldier during our Earth's 1st World War, got frozen for 70 years and has recently been found and thawed!" said Stark and Steve glared at him. Stark then went to the redhead woman.

"This is Natasha Romanov also known as the Black Widow, SHIELD agent and once infiltrated my company as an assistant" Stark said and Natasha glared at him. He then pointed to the man with the armour and red cape.

"And this is Thor god of Thunder and the brother of Loki the guy we got locked up" said Stark. Thor was too busy looking at Twilight and Soarin to even glare at Stark.

Stark then pointed to himself and said "and I'm Tony Stark, billionaire, philanthropist, scientist, owner of Stark Enterprises, SHIELD consultant and Iron Man!"

"Well my name's Twilight Sparkle and this is Soarin of the Wonderbolts" said Twilight introducing herself and Soarin.

Thor then got up from his chair and walked closer to Twilight and Soarin.

"You are Equestrians aren't you?" asked Thor while Twilight and Soarin nodded and then both gasped in shock.

"How do you know?" asked Soarin.

"My father Odin king of the Asgards discovered upon Equestria when he explored the Nine Reams of the World Tree" Thor explained.

"Nine Realms? World Tree" asked Twilight "but those are just mere myths!"

"I assure you they are as real as you and me" Thor said shaking his head "my father once told me the story of when he went into Equestria and met your Princess Celestia and Princess Luna during the reign of Discord."

"I'm sure it's a good story but we kind of have a mission!" said Tony.

Seeing the faces of Twilight and Soarin which showed they wanted him to continue and ignoring Tony's protests Thor told of the tale:

Flashback

Celestia and Luna are bowing before Odin with his beard, his one eye (the other one he gave to be allowed to drink from a fountain of wisdom) and his spear Gungnir.

"Odin All-Father" said Celestia bowing "us allicorns are powerful but we cannot stand a chance against Discord if we stood up to him, please help me and my sister find something which will make it possible to take him down and free Equestria from Discord's tyranny!"

"Luna and Celestia I can tell you are trustworthy" said Odin "and from my personal vault I give you these relics:"

He then presented them with 5 golden necklaces each with a different coloured stone and a golden tiara with a purple star gem.

"These represent the powers of kindness, generosity, loyalty, honesty, laughter and magic" said Odin "with these power you will be able to turn the Discord creature into stone freeing your land from his tyranny!"

Later Celestia and Luna returned to Odin with the relics.

"Thank you for allowing us to use these relics Odin" said Luna "thanks to them Discord is now stone and Equestria is safe from his tyranny!"

"We now return you the relics you have allowed us to borrow." Said Celestia.

"Keep them" said Odin smiling "you may need them again if Discord manages to free himself or another threat comes to your land, consider them gifts from Asgard!"

Holding Gungnir Odin then departed back to Asgard.

End Flashback

"Wow so the Elements of Harmony came from your father" said Twilight excitedly.

"Well your princesses called them that but yes my father gave them the relics" said Thor nodding "want to hear more stories?"

Twilight and Soarin both nodded enthusiastically.

"okay I mean we got a demigod imprisoned, an artefact we need to find and the fate of the world on our shoulders" said Tony "it's not like we have anything better to do than tell stories!"

As this was happening in another part of the Hellicarrier. In a glass chamber in the middle of the room with the ground connected to a hole to the outside of the Hellicarrier was a man with long hair, black and green armour with a yellow band around his neck and a green cape. This was Loki adopted son of Odin, adopted brother of Thor, birth son of the late king of the Frost Giants Laufey and the god of mischief and lies.

He was thinking about his so called brother Thor and how he spent all his life trying to prove to he called his father he was just as good as him. It angered him and his thoughts shifted to somewhere else.

"Soon I will be able to escape" thought Loki "and then I will be able to use the Tesseract to open up a portal allowing the Chentauri race to come to earth allowing me to conquer this puny planet as king!"

He then chuckled at the thought. When his plan comes to fruition not even his so called brother could stop him.

The next day in Equestria Total Vane and the weather ponies involved in Hydra were working on the clouds when Princess Celestia, Shining Armor and a group of Canterlot Guards came up to them.

"Can I speak with you for a minute Total Vane?" asked Princess Celestia.

"Sure thing your highness" said Vane as he floated back down.

"I want to ask more about the weather storm that hit during the wedding" Princess Celestia said "was it really an accident caused by a glitch!"

"Of course your highest, we are still trying to figure out what caused the glitch" Vane said in a well rehearsed story.

Then the Pegasus guards flown up and inspected the clouds.

"Princess Celestia" said one of them "these clouds are showing signs of some strange energy not found in clouds."

One of the weather ponies was nervous and thinking the jig was finally up shouted "Alright! It was no accident! We caused that incident at the wedding! Vane had us do it for our secret plan!"

"Thanks a lot you blabber mouth" shouted Vane furiously looking up to the nervous Pegasus "when our boss hears about your blabbing of our plans..."

Vane then realised he just confirmed it was no accident and he was responsible for this. Nervous and sporting a fake smile on his face he turned his attention to the princess and the guards. The guards looked serious; Princess Celestia wore her rare angry face and Shining Armor.

"Total Vane as of this moment you are removed as head weather pony and herby fired from the Canterlot weather patrol" said Princess Celestia trying to hold back just how angry she was actually feeling.

Shining Armor however was making no attempt to hide how furious he was.

"YOU!" Shining Armor shouted furiously "Thanks to you my little sister is probably alone and frightened in a world she knows nothing about! You are hereby under arrest..."

One of the weather ponies then sent a stray lightning bolt to the ground causing Celestia and the guards to jump. This caused the distraction Vane and the weather ponies needed to fly away and escape.

When they realised just what happened the Pegasus guards then flew after them.

After 10 minutes of chase Vane and the weather ponies managed to lose the guards. They then swooped down to large forest Gilda had entered before the wedding.

They walked until they came across the shed. Making sure nopony was looking they entered. Vane then opened up the floorboards and then entered the passageway to the secret headquarters of Hydra. They entered to see Red Skull sitting on his chair with Gilda by his side.

"Sorry to disturb you my fuehrer" said Vane as Red Skull commanded his minions to call him fuehrer (he thought he was more deserving of that title than his former boss Hitler) "but Princess Celestia knows I was responsible for causing that storm!"

"WHAT?" asked Red Skull getting up "how does she know?"

Vane then angrily pointed to the nervous Pegasus who had blabbed "this idiot blabbed to the Princess and the captain of the royal guards whose sister was sent through that wormhole we made and we were able to escape before we got arrested!"

Red Skull then angrily took from a table a gun powered by the leftover energy of the Tesseract. He then blasted the nervous Pegasus with the gun beaming out blue energy which totally destroyed the poor pony.

"Let this be a lesson to those who fail me" said Red Skull to the Hydra agents.

He then faced Vane and said "I will not punish you for that idiot's failure, it would be best if you stay here until I say otherwise!"

Vane then nodded.

"Now that Celestia knows that there was a plan in that storm we must move up our plans" Red Skull said facing his army "soon we will be ready and with our weapons and power we will be able to destroy the princesses and conquer Equestria!"